National League Tables
1998/99 Tables◄ 1999/2000 Tables ►2000/01 Tables
Football Conference 1999/2000
| Pos | Club | Pld | W | D | L | F | A | GD | Pts | Notes |
| 1st | Kidderminster Harriers | 42 | 26 | 7 | 9 | 75 | 40 | +35 | 85 | ▲Promoted to FL |
| 2nd | Rushden & Diamonds | 42 | 21 | 13 | 8 | 71 | 42 | +29 | 76 | Runners Up |
| 3rd | Morecambe | 42 | 18 | 16 | 8 | 70 | 48 | +22 | 70 | - |
| 4th | Scarborough | 42 | 19 | 12 | 11 | 60 | 35 | +25 | 69 | - |
| 5th | Kingstonian | 42 | 20 | 7 | 15 | 58 | 44 | +14 | 67 | - |
| 6th | Dover Athletic | 42 | 18 | 12 | 12 | 65 | 56 | +9 | 66 | - |
| 7th | Yeovil Town | 42 | 18 | 10 | 14 | 60 | 63 | -3 | 64 | - |
| 8th | Hereford United | 42 | 15 | 14 | 13 | 61 | 52 | +9 | 59 | - |
| 9th | Southport | 42 | 15 | 13 | 14 | 55 | 56 | -1 | 58 | - |
| 10th | Stevenage Borough | 42 | 16 | 9 | 17 | 60 | 54 | +6 | 57 | - |
| 11th | Hayes | 42 | 16 | 8 | 18 | 57 | 58 | -1 | 56 | - |
| 12th | Doncaster Rovers | 42 | 15 | 9 | 18 | 46 | 48 | -2 | 54 | - |
| 13th | Kettering Town | 42 | 12 | 16 | 14 | 44 | 50 | -6 | 52 | - |
| 14th | Woking | 42 | 13 | 13 | 16 | 45 | 53 | -8 | 52 | - |
| 15th | Nuneaton Borough | 42 | 12 | 15 | 15 | 49 | 53 | -4 | 51 | - |
| 16th | Telford United | 42 | 14 | 9 | 19 | 56 | 66 | -10 | 51 | - |
| 17th | Hednesford Town | 42 | 15 | 6 | 21 | 45 | 68 | -23 | 51 | - |
| 18th | Northwich Victoria | 42 | 13 | 12 | 17 | 53 | 78 | -25 | 51 | - |
| 19th | Forest Green Rovers | 42 | 13 | 8 | 21 | 54 | 63 | -9 | 47 | - |
| 20th | Welling United | 42 | 13 | 8 | 21 | 54 | 66 | -12 | 47 | ▼Relegated to SFL |
| 21st | Altrincham | 42 | 9 | 19 | 14 | 51 | 60 | -9 | 46 | ▼Relegated to NPL |
| 22nd | Sutton United | 42 | 8 | 10 | 24 | 39 | 75 | -36 | 34 | ▼Relegated to ISL |
-
|
Relegated from the Football League |
| ▼Chester City were Relegated from Football League Division 3 |
-
|
Teams Promoted to the Football Conference |
| ▲Leigh RMI were Promoted from the Northern Premier League Premier Division |
| ▲Boston United were Promoted from the Southern League Premier Division |
| ▲Dagenham & Redbridge were Promoted from the Isthmian League Premier Division |
1998/99 Tables◄ 1999/2000 Tables ►2000/01 Tables