North West Counties Football League
1998/99 Tables◄ 1999/00 Tables ►2000/01 Tables
North West Counties League Division 1 1999/00
| Pos | Club | Pld | W | D | L | F | A | GD | Pts | Notes |
| 1st | Vauxhall Motors | 42 | 29 | 7 | 6 | 101 | 32 | +69 | 94 | ▲Champions |
| 2nd | Newcastle Town | 42 | 26 | 7 | 9 | 62 | 35 | +47 | 85 | Runners Up |
| 3rd | Ramsbottom United | 42 | 23 | 10 | 9 | 87 | 53 | +34 | 79 | - |
| 4th | Mossley | 42 | 23 | 10 | 9 | 80 | 50 | +30 | 79 | - |
| 5th | Rossendale United | 42 | 23 | 9 | 10 | 77 | 46 | +31 | 78 | - |
| 6th | Skelmersdale United | 42 | 22 | 9 | 11 | 91 | 53 | +33 | 75 | - |
| 7th | Fleetwood Freeport | 42 | 21 | 10 | 11 | 75 | 45 | +30 | 73 | - |
| 8th | Prescot Cables | 42 | 21 | 10 | 11 | 83 | 55 | +28 | 73 | - |
| 9th | St Helens Town | 42 | 20 | 13 | 9 | 81 | 59 | +22 | 73 | - |
| 10th | Clitheroe | 42 | 21 | 7 | 14 | 75 | 49 | +26 | 70 | - |
| 11th | Salford City | 42 | 17 | 7 | 18 | 70 | 69 | +1 | 58 | - |
| 12th | Atherton Collieries | 42 | 16 | 6 | 20 | 58 | 68 | -10 | 54 | - |
| 13th | Kidsgrove Athletic | 42 | 14 | 9 | 19 | 47 | 66 | -19 | 51 | - |
| 14th | Abbey Hey | 42 | 14 | 8 | 20 | 50 | 75 | -25 | 50 | - |
| 15th | Nantwich Town | 42 | 13 | 9 | 20 | 60 | 73 | -13 | 48 | - |
| 16th | Great Harwood Town | 42 | 12 | 9 | 21 | 55 | 81 | -26 | 45 | - |
| 17th | Glossop North End | 42 | 10 | 11 | 21 | 52 | 73 | -21 | 41 | - |
| 18th | Cheadle Town | 42 | 8 | 13 | 21 | 49 | 85 | -36 | 37 | - |
| 19th | Maine Road | 42 | 9 | 10 | 23 | 59 | 100 | -41 | 37 | - |
| 20th | Leek County School Old Boys | 42 | 8 | 10 | 24 | 49 | 101 | -52 | 34 | - |
| 21st | Bootle | 42 | 6 | 8 | 28 | 29 | 90 | -61 | 26 | ▼Relegated |
| 22nd | Atherton Laburnum Rovers | 42 | 4 | 12 | 26 | 51 | 103 | -52 | 24 | ▼Relegated |
North West Counties League Division 2 1999/00
| Pos | Club | Pld | W | D | L | F | A | GD | Pts | Notes |
| 1st | Woodley Sports | 34 | 24 | 6 | 4 | 85 | 29 | +56 | 78 | ▲Champions |
| 2nd | Curzon Ashton | 34 | 24 | 6 | 4 | 78 | 26 | +52 | 78 | ▲Runners Up |
| 3rd | Nelson | 34 | 21 | 8 | 5 | 77 | 31 | +46 | 71 | - |
| 4th | Darwen | 34 | 20 | 6 | 8 | 69 | 35 | +34 | 66 | - |
| 5th | Bacup Borough | 34 | 15 | 11 | 8 | 68 | 42 | +26 | 56 | - |
| 6th | Squires Gate | 34 | 16 | 7 | 11 | 70 | 49 | +21 | 55 | - |
| 7th | Tetley Walker | 34 | 16 | 4 | 14 | 56 | 70 | -14 | 52 | - |
| 8th | Castleton Gabriels | 34 | 15 | 6 | 13 | 67 | 67 | 0 | 51 | - |
| 9th | Warrington Town | 34 | 14 | 8 | 12 | 66 | 44 | +22 | 50 | - |
| 10th | Chadderton | 34 | 12 | 12 | 10 | 52 | 57 | -5 | 48 | - |
| 11th | Formby | 34 | 12 | 8 | 14 | 52 | 68 | -16 | 44 | - |
| 12th | Alsager | 34 | 11 | 8 | 15 | 48 | 64 | -16 | 41 | - |
| 13th | Colne | 34 | 12 | 2 | 20 | 44 | 70 | -26 | 38 | - |
| 14th | Holker Old Boys | 34 | 8 | 11 | 15 | 59 | 73 | -14 | 35 | - |
| 15th | Blackpool Mechanics | 34 | 9 | 6 | 19 | 49 | 74 | -25 | 33 | - |
| 16th | Daisy Hill | 34 | 7 | 5 | 22 | 41 | 75 | -34 | 26 | - |
| 17th | Oldham Town | 34 | 4 | 6 | 24 | 43 | 86 | -43 | 18 | - |
| 18th | Ashton Town | 34 | 5 | 2 | 27 | 30 | 94 | -64 | 17 | - |
Teams Leaving the North West Counties League
| ▲Vauxhall Motors were Promoted to Northern Premier League Division 1 |
Teams Joining the North West Counties League
| ▼Flixton were Relegated from the Northern Premier League Division 1 |
| ▲Padiham were Promoted from the West Lancashire Football League Division 1 |
| ▲Stone Dominoes were Promoted from the Midland Football League |
1998/99 Tables◄ 1999/00 Tables ►2000/01 Tables